Adding and removing javascript and css when and where you need it – in Magento
Adding and removing javascript and css is handled separately within Magento. CSS is added in the usual fashion, where you have a <link rel=”stylesheet”… />. However, any included javascript (unless linked to “by hand” from a theme’s skin) is pulled via a php files which reads through the “js” folder in the root directory (root/js/index.php is responsible for this) That is all well and good for Magento.
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